PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G29020.2
Common NameAtMYB110, MYB110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 305aa    MW: 35288.7 Da    PI: 8.9811
Description myb domain protein 110
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G29020.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-1567112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l ++v  +G+ +W+ Ia+ m+ gRt+k+c++rw++ 
      AT3G29020.2  67 RGHWRISEDTQLMELVSVYGPQNWNHIAESMQ-GRTGKSCRLRWFNQ 112
                      789999**************************.***********996 PP

2Myb_DNA-binding51.22.9e-16120163247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
      AT3G29020.2 120 RAFSDEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 163
                      689******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.13862113IPR017930Myb domain
SMARTSM007171.2E-1066115IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-2767160IPR009057Homeodomain-like
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2468120IPR009057Homeodomain-like
CDDcd001677.16E-1070111No hitNo description
PROSITE profilePS5129425.414114168IPR017930Myb domain
SMARTSM007171.8E-13118166IPR001005SANT/Myb domain
PfamPF002491.3E-12120163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-20121168IPR009057Homeodomain-like
CDDcd001671.46E-9121164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135Molecular Functiontranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKMDFSCFQE YPFEFHCRGT TFNGFRENNA VSETVEEFCN KRRMQKKSDD LKTKKKKKQS  60
VSRVCSRGHW RISEDTQLME LVSVYGPQNW NHIAESMQGR TGKSCRLRWF NQLDPRINKR  120
AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN  180
GSAHESNTDH KIFNLSPGNV DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ  240
GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF  300
LGVGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-31671684105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14054KRRMQKKSDDLKTKK
24057KRRMQKKSDDLKTKKKKK
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258004_at0.0
Expression AtlasAT3G29020-
AtGenExpressAT3G29020-
ATTED-IIAT3G29020-
Functional Description ? help Back to Top
Source Description
TAIREncodes a putative transcription factor (MYB110).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G29020.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G29020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727320.0AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078220.10.0myb domain protein 110
TrEMBLF4J1R50.0F4J1R5_ARATH; Myb domain protein 110
STRINGAT3G29020.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Representative plantOGRP5171784
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Stracke R,Werber M,Weisshaar B
    The R2R3-MYB gene family in Arabidopsis thaliana.
    Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
    [PMID:11597504]
  3. Osuna D, et al.
    Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.
    Plant J., 2007. 49(3): p. 463-91
    [PMID:17217462]
  4. Johnston AJ, et al.
    Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte.
    Genome Biol., 2007. 8(10): p. R204
    [PMID:17915010]